PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00082
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 152aa    MW: 16658.4 Da    PI: 4.9626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00082genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.4e-171161155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                s+ykG+r++k +g+Wv eIr+p+    + +r +lg+f tae+Aa a++ a  +l+ 
  AA31G00082 11 SKYKGIRRRK-WGKWVTEIRVPR----SqQRLWLGSFSTAEGAAVAHDVAYYCLHR 61
                89*****998.**********84....35************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.34E-161164IPR016177DNA-binding domain
PfamPF008471.0E-81159IPR001471AP2/ERF domain
CDDcd000183.18E-241175No hitNo description
PROSITE profilePS5103220.6531273IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-231264IPR001471AP2/ERF domain
SMARTSM003801.2E-221279IPR001471AP2/ERF domain
PRINTSPR003675.5E-91324IPR001471AP2/ERF domain
PRINTSPR003675.5E-93551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MDSNDVGENQ SKYKGIRRRK WGKWVTEIRV PRSQQRLWLG SFSTAEGAAV AHDVAYYCLH  60
RPSSLQDSSL NLPHLLPTTL TSNNNINTSP TSIQKAASDA GMAVDAGFGT VEDGGCEGTA  120
SEMYKEEEGE RLNISVYDYL DQNKANLELG GT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-14674873Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00082
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177307.12e-65Integrase-type DNA-binding superfamily protein
SwissprotQ9C9I82e-66ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A178WAF66e-63A0A178WAF6_ARATH; Uncharacterized protein
STRINGAT1G71520.18e-65(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-54ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]