PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00127
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TCP
Protein Properties Length: 399aa    MW: 42578.3 Da    PI: 9.6994
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00127genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.54.7e-3871168389
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas....nsssg......k 89 
                 g k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s ++ +s    ++s++      +
  AA31G00127  71 GVKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNASLRNRGStifaQPSKSsplsfhS 168
                 5699****************************************************************888655555555553333111113344330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.08576130IPR017887Transcription factor TCP subgroup
PfamPF036342.9E-3676186IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEIRTNQNSH DRNREATTVT ATVVPLQLNS TEKESPGSVP FTGNRTTSGT SSNSNSTSTS  60
SGSALAIVKS GVKKPSKDRH TKVDGRGRRI RMPAMCAARV FQLTRELGHK SDGETIEWLL  120
QQAEPAIIAT TGTGTIPANF STLNASLRNR GSTIFAQPSK SSPLSFHSTG MALYDENVCS  180
NGSTVANVDA SRKLLNAATQ NAAVFGFHHQ MYPPIMPSDA TMRNQSSLVK PYREDFFKES  240
SSGAEPSGSS QKTSQFQDQE LSQGRVTANV VPQPMWAVAP GTTNGGSGFW MLPMGGSNVA  300
APAREQMQQQ QQPGQHMWAF NPGNYPGSGR VVTAPMGSMM LGGQQLGLGV AESNMAAAAA  360
TMRGGRSDGL AMTLDQHQHH HHQGTNQIQG SENTDDDKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00127
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301977.11e-175transcription factor TCP22
SwissprotQ9C7G41e-165TCP22_ARATH; Transcription factor TCP22
TrEMBLR0I9T31e-174R0I9T3_9BRAS; Uncharacterized protein
STRINGCagra.4006s0026.1.p1e-175(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-131TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]