PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00205
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 201aa    MW: 22554.2 Da    PI: 6.1079
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00205genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.6e-152474155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ykGVr ++ +g++v eIr p   +k++r++lg++ t+e Aa a++ a  +l+g
  AA31G00205 24 KKYKGVRMRS-WGSYVTEIRAP---NKKTRIWLGSYSTPEAAAIAYDTALFCLKG 74
                59*****998.**********9...347************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.79E-262484No hitNo description
SuperFamilySSF541711.18E-172583IPR016177DNA-binding domain
PfamPF008477.5E-92574IPR001471AP2/ERF domain
PROSITE profilePS5103219.9282582IPR001471AP2/ERF domain
SMARTSM003801.3E-302588IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-272583IPR001471AP2/ERF domain
PRINTSPR003671.8E-72637IPR001471AP2/ERF domain
PRINTSPR003671.8E-74864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSTSSSSPSS SSLSSLHDVK SCKKKYKGVR MRSWGSYVTE IRAPNKKTRI WLGSYSTPEA  60
AAIAYDTALF CLKGSKSNLN FPHLFTTSST LVPHFDEKTI LSPKSIQKLA ALAASSFSSD  120
HSTPPDHHHS PPQHDNHHHD DNGDDVAMLM GSFVDYDEEL MIMEPLLYDN NEKFLFDYSS  180
SEINLMTMSD DFYDIPLWSF S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-172482160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00246DAPTransfer from AT1G77640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00205
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013720187.15e-50ethylene-responsive transcription factor ERF013-like
SwissprotQ9CAP41e-49ERF13_ARATH; Ethylene-responsive transcription factor ERF013
TrEMBLA0A1J3HIC01e-51A0A1J3HIC0_NOCCA; Uncharacterized protein (Fragment)
TrEMBLA0A1J3JMN81e-51A0A1J3JMN8_NOCCA; Uncharacterized protein (Fragment)
STRINGBra015660.1-P3e-49(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.11e-46ERF family protein