PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00279
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Dof
Protein Properties Length: 203aa    MW: 23067.4 Da    PI: 4.7033
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00279genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof66.44.6e-2125602560
      zf-Dof 25 slsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                slsqPry+Ck+CrryWtkGG+lrn+P Ggg+rk+ +
  AA31G00279 25 SLSQPRYYCKGCRRYWTKGGSLRNIPAGGGCRKRSR 60
                689*****************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088415.528760IPR003851Zinc finger, Dof-type
PfamPF027011.2E-162560IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-112855IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
VAVYEREQLP KPSFLWTRTS SSLSSLSQPR YYCKGCRRYW TKGGSLRNIP AGGGCRKRSR  60
KRLTSSRTFG RNENQVDETR TGLDHQDEES QPEIDLAAVF ANYVNHQSPS RTQESSPTTT  120
TTTSSDVLDW GVDLGFFGQF DLTQKIEDQE EMFKFQGLLN DKEIQEILNC SFSEESEQLN  180
SPASFMINDD CWINSSDLST FGI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00279
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890437.28e-66dof zinc finger protein DOF1.2
SwissprotP683491e-66DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBLD7KK012e-64D7KK01_ARALL; Dof-type zinc finger domain-containing protein
STRINGscaffold_102386.14e-65(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64622643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.12e-51Dof family protein