PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA31G00306

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

SBP

Protein Properties

Length: 1050aa MW: 116768 Da PI: 8.4049

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA31G00306	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.6	2.3e-40	146	222	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv++C++dls ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ AA31G00306 146 CQVDNCKEDLSVAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 222 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.3E-32	140	207	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.966	143	220	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.32E-37	144	224	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.1E-29	146	219	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	3.11E-6	804	941	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.80E-7	804	940	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.4E-5	842	951	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1050 aa Download sequence Send to blast
MDKVGTQEAA PFFIHQSLSP MGKKRHLYYQ MSNHQPQWLV PSQPQPQQQL RNDWNPKMWE 60 WDSQRFEAKP VEAEILRLGN DTQLDINNNK GLTSRNTSGA NEGQERDLDL NLGTGVNTVE 120 ETQGTTRPSK KVRSGSPGSG VNYPKCQVDN CKEDLSVAKD YHRRHKVCEV HSKATKALVG 180 KQMQRFCQQC SRFHLLSEFD EGKRSCRRRL AGHNRRRRKT QPEEIASRVT APGNRDNTSN 240 GNMDLMALLT ALACGQDSDL CAAGRNEAKS SEVPQRDQLL QILNKINSLP LPMDLVSKLN 300 NIGILARQNP DHPLVNTPND KNGTSPSTMD LLAVLSTTLG SSAPDAIALL SQGGFGNKDS 360 DKTKLTSSDQ DNTTNLEKKT LDFPSFGGER SSSSNVSPSQ DSDSHAQDAR SSLSLQLFTS 420 SPEDESRPTV ASSRKYYSSA SSNPAEDRSP SSSPVMQELF PLQTSPETMR SNNYKTTSPR 480 TSCLPLELFG ASNRGTANPN FKGFRQQSGY ASSGSDYSPP SLNSDAQDRT GKIVFKLFGK 540 DPSQLPGTLR TKIYSWLSNT PSEMESYIRP GCVVLSVYVA MSAPAWEQLE ENLMQRVSSL 600 VKDSEFWSNT RFLVNTGRQL ASYKHGRIRL SKSWRTWSSP ELITVSPLAV VPGEETNLVV 660 RGRSLTNAGI SFRCANMGSY ASMKVTETAH SRTTFDELNV NSFKVHGTHT GSLGRCFVEV 720 ENGFRSDSFP LIIANATICE ELNRLEDEFH TDGDMIEEQA HSSDRPRSRE EVLCFLNELG 780 WLFQRKCIKG ESSNFSLPRF RFLLVCSVER DYCSLTRTLL DMMVERNLDK DGLNKESSDM 840 LSEIQLLNRA VKRKNTKMAE TLIQYSINAI TDPTKRFIFK PNIAGPGDIT PLHLAASTSG 900 SDDMIDVLTN DPQEIGLSCW NSLHDASGQT PYSYAAMRNN HMYNTMVARK LADKRNGQVS 960 LNIENGIDEI GLSRRLSSEI KRSSCTSCAT VALKYQKRGS GSKRFFPTPI IHSMLAVATV 1020 CVCVCVFMHA FPFVRQGSHF SWKGLDYGAM

Sequence ? help Back to Top

Protein Sequence Length: 1050 aa Download sequence Send to blast

MDKVGTQEAA PFFIHQSLSP MGKKRHLYYQ MSNHQPQWLV PSQPQPQQQL RNDWNPKMWE  60
WDSQRFEAKP VEAEILRLGN DTQLDINNNK GLTSRNTSGA NEGQERDLDL NLGTGVNTVE  120
ETQGTTRPSK KVRSGSPGSG VNYPKCQVDN CKEDLSVAKD YHRRHKVCEV HSKATKALVG  180
KQMQRFCQQC SRFHLLSEFD EGKRSCRRRL AGHNRRRRKT QPEEIASRVT APGNRDNTSN  240
GNMDLMALLT ALACGQDSDL CAAGRNEAKS SEVPQRDQLL QILNKINSLP LPMDLVSKLN  300
NIGILARQNP DHPLVNTPND KNGTSPSTMD LLAVLSTTLG SSAPDAIALL SQGGFGNKDS  360
DKTKLTSSDQ DNTTNLEKKT LDFPSFGGER SSSSNVSPSQ DSDSHAQDAR SSLSLQLFTS  420
SPEDESRPTV ASSRKYYSSA SSNPAEDRSP SSSPVMQELF PLQTSPETMR SNNYKTTSPR  480
TSCLPLELFG ASNRGTANPN FKGFRQQSGY ASSGSDYSPP SLNSDAQDRT GKIVFKLFGK  540
DPSQLPGTLR TKIYSWLSNT PSEMESYIRP GCVVLSVYVA MSAPAWEQLE ENLMQRVSSL  600
VKDSEFWSNT RFLVNTGRQL ASYKHGRIRL SKSWRTWSSP ELITVSPLAV VPGEETNLVV  660
RGRSLTNAGI SFRCANMGSY ASMKVTETAH SRTTFDELNV NSFKVHGTHT GSLGRCFVEV  720
ENGFRSDSFP LIIANATICE ELNRLEDEFH TDGDMIEEQA HSSDRPRSRE EVLCFLNELG  780
WLFQRKCIKG ESSNFSLPRF RFLLVCSVER DYCSLTRTLL DMMVERNLDK DGLNKESSDM  840
LSEIQLLNRA VKRKNTKMAE TLIQYSINAI TDPTKRFIFK PNIAGPGDIT PLHLAASTSG  900
SDDMIDVLTN DPQEIGLSCW NSLHDASGQT PYSYAAMRNN HMYNTMVARK LADKRNGQVS  960
LNIENGIDEI GLSRRLSSEI KRSSCTSCAT VALKYQKRGS GSKRFFPTPI IHSMLAVATV  1020
CVCVCVFMHA FPFVRQGSHF SWKGLDYGAM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-29	135	219	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA31G00306

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010471811.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16 isoform X2
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A1J3FTW4	0.0	A0A1J3FTW4_NOCCA; Squamosa promoter-binding-like protein 14
STRING	Bostr.20129s0096.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3999	25	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]