PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00430
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 63aa    MW: 7449.36 Da    PI: 5.0522
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00430genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-09548344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+ E +++ +a + + ++   +W  +a+ +g +++++++k ++
       AA31G00430  5 SWTAKENKRFERALAVYDKEtpeRWQNVANAVG-NKSAEEVKRHY 48
                     5*****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.481152IPR017877Myb-like domain
SMARTSM007175.0E-6254IPR001005SANT/Myb domain
PfamPF002496.3E-8548IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-6557IPR009057Homeodomain-like
CDDcd001678.16E-6548No hitNo description
SuperFamilySSF466893.29E-13558IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MTSFSWTAKE NKRFERALAV YDKETPERWQ NVANAVGNKS AEEVKRHYDV LVEDLMNIEY  60
INL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-215591064RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444178.14e-28PREDICTED: protein RADIALIS-like 6
SwissprotQ8GW754e-27RADL5_ARATH; Protein RADIALIS-like 5
TrEMBLM4D6S33e-28M4D6S3_BRARP; Uncharacterized protein
STRINGBra012183.1-P5e-29(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.12e-29RAD-like 5