PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA31G00498

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Nin-like

Protein Properties

Length: 243aa MW: 28220.1 Da PI: 8.2093

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA31G00498	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.1	5.6e-26	101	151	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s e++s+yF++pi++AA eL+v+lT+LKr+CR++GI+RWPhRk+ sl AA31G00498 101 SKALSKETISRYFYMPITQAAMELNVGLTLLKRRCRELGIRRWPHRKLMSL 151 5889********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.962	86	171	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-21	104	151	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MADQEERPFS FLNQSLSFDW EDELLALHNN SVSLTFPWTV TTSLSLPDLE SFSALSPDIL 60 DSYGLESSKE TEKNRGNGDL EKKKAEETKI MEMQRDHELD SKALSKETIS RYFYMPITQA 120 AMELNVGLTL LKRRCRELGI RRWPHRKLMS LQTLIRNVKF SVQELQKMER EENKGKLRNA 180 VEMLEKEKKT MEELPDLEFE DKTKRLRQAC FKANHKRKKR SLSLKEQSLT SYASSSSDGS 240 VTS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00234	DAP	Transfer from AT1G74480	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA31G00498

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010428433.1	3e-93	PREDICTED: protein RKD2
Swissprot	Q9CA66	3e-84	RKD2_ARATH; Protein RKD2
TrEMBL	V4M983	7e-87	V4M983_EUTSA; Uncharacterized protein
STRING	XP_010428433.1	1e-92	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	1e-76	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]