PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00559
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 251aa    MW: 28660.9 Da    PI: 6.679
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00559genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08147194455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR +iN+++  L++++P +     k +  a++L + ++Y++sLq
  AA31G00559 147 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMATMLDEIINYVQSLQ 194
                 8*************************9....356999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-16141211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.45E-10141198No hitNo description
PROSITE profilePS5088815.269143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16143204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-6147194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-8149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MANLSSDFET YTMVDDPITQ LAELNNTLLH HQHHFHFQSF PSFFDQNPFH HFPGKSPEIN  60
NNNLQGIFLP SNNEEESSSG LFDTKKRKTS TADMSSSDSF SDQTYLSSST KNGCLKRGKR  120
LKKREENEEK EREVIHVRAK RGQATDSHSL AERVRRGKIN ERLRCLQDIV PGCYKTMGMA  180
TMLDEIINYV QSLQNQVEFL SMKLTAASSF YDFNSETDAM DSMQRAKARE AVEMGQVRDG  240
SPVFHSSSWT L
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00559
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674822.11e-117transcription factor BEE 3-like
SwissprotQ8GWK71e-110BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A0D3D0G91e-114A0A0D3D0G9_BRAOL; Uncharacterized protein
STRINGCagra.0876s0016.1.p1e-121(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.18e-97BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]