PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00656
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NF-YA
Protein Properties Length: 321aa    MW: 35498.4 Da    PI: 9.6572
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00656genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.83.1e-32171227158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep++VNaKQ+++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF
  AA31G00656 171 NEPVFVNAKQFHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 227
                 59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.9E-38169230IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.14170230IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.8E-27172227IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-23173195IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860175195IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.0E-23204227IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MHQMYKKKDS VSSSVHSTLP YLNTSISWGN PSDSLSLKMD TTKPISNSKQ ISFQDQDSSS  60
TQSTGQSYTE VASSGDDNPS KQILFSPQSN VCEETQRKGF GTNTNKSGST TGFTNIQFGP  120
SQATNYSFHY TDPHFGGLLA ASYLQQGPIC NPQMVSLVQG RVPLPVELTE NEPVFVNAKQ  180
FHAIMRRRQQ RAKLEAQNKL IKARKPYLHE SRHVHALKRP RGSGGRFLNT KKLQESEEVA  240
VTGQEHGNLA HKKGDLFRFE GQMLQKNKDR GATTSGSDIT STSDGVDVFG HGEFQFSGCP  300
IQVNRGIHGQ SNDLHHFSVH I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-19172232363NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00656
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565049.11e-151nuclear factor Y, subunit A3
SwissprotQ93ZH21e-152NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A178W6C61e-149A0A178W6C6_ARATH; NF-YA3
STRINGXP_006390615.11e-149(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-119nuclear factor Y, subunit A3