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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | AA31G00681 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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| Family | LBD | ||||||||
| Protein Properties | Length: 201aa MW: 22395.2 Da PI: 4.5079 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 53 | 1e-16 | 4 | 93 | 2 | 91 |
DUF260 2 CaaCkvlrrkCak.dCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
C +C +r++C+ + l +yf + q+++f v+ +FG +n kl+++ p + r++a++ + yeA+ar++dP G+ +++ +l++ le lk
AA31G00681 4 CVVCSWKRQACPGlNSCLGQYFVD-QRESFHEVKAIFGITNAKKLIDKNPANLRQEAARFMKYEANARMNDPLGGSGKIVENLTEALEDLK 93
9**********9635778899865.5699********************************************************999887 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 11.893 | 2 | 103 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 1.5E-14 | 4 | 93 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 201 aa Download sequence Send to blast |
MNTCVVCSWK RQACPGLNSC LGQYFVDQRE SFHEVKAIFG ITNAKKLIDK NPANLRQEAA 60 RFMKYEANAR MNDPLGGSGK IVENLTEALE DLKIVHTAAE ILYKEAVEGN LTEALEDLNL 120 KMVHTVLFSK LACFLAEFAR LNQEIAELRE DVRSLSYRLE GDVKLEILGS ASLIQETGTS 180 SGKDSEKQDQ DETTDESEAS E |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | AA31G00681 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G42440.1 | 7e-10 | LBD family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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