PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA31G00704

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

M-type_MADS

Protein Properties

Length: 193aa MW: 22134.2 Da PI: 5.4404

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA31G00704	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.6	3.3e-23	50	98	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+++++rqvtfskRr+g++KK ELSvLC+a++++i fs g++y + AA31G00704 50 KEIKEETKRQVTFSKRRTGLFKKSAELSVLCGAQICIITFSRCGRIYSF 98 689********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.637	42	102	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-25	42	101	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-23	43	111	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-20	44	64	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-22	52	98	IPR002100	Transcription factor, MADS-box
CDD	cd00120	3.60E-22	56	99	No hit	No description
PRINTS	PR00404	1.2E-20	64	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-20	79	100	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MEEQQKALAI TSIQPKEHNP LQNPNLPENQ PIEVNQNPKI TKGRQKIEIK EIKEETKRQV 60 TFSKRRTGLF KKSAELSVLC GAQICIITFS RCGRIYSFGD VDTMINKYIY KKPVNLRTVS 120 GTPEEEDGGR MWWETPVETV PEEELDAYMN ALINLKDNLT KKINNDQTAE NFPLLPNPTA 180 LDVIQNMIEW NST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	1e-14	43	124	1	85	Myocyte-specific enhancer factor 2A
3kov_B	1e-14	43	124	1	85	Myocyte-specific enhancer factor 2A
3kov_I	1e-14	43	124	1	85	Myocyte-specific enhancer factor 2A
3kov_J	1e-14	43	124	1	85	Myocyte-specific enhancer factor 2A
3p57_A	1e-14	43	124	1	85	Myocyte-specific enhancer factor 2A
3p57_B	1e-14	43	124	1	85	Myocyte-specific enhancer factor 2A
3p57_C	1e-14	43	124	1	85	Myocyte-specific enhancer factor 2A
3p57_D	1e-14	43	124	1	85	Myocyte-specific enhancer factor 2A
3p57_I	1e-14	43	124	1	85	Myocyte-specific enhancer factor 2A
3p57_J	1e-14	43	124	1	85	Myocyte-specific enhancer factor 2A
5f28_A	2e-14	43	124	2	86	MEF2C
5f28_B	2e-14	43	124	2	86	MEF2C
5f28_C	2e-14	43	124	2	86	MEF2C
5f28_D	2e-14	43	124	2	86	MEF2C
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA31G00704

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010431491.1	8e-65	PREDICTED: MADS-box transcription factor 23-like
TrEMBL	R0ICD3	6e-59	R0ICD3_9BRAS; Uncharacterized protein
STRING	XP_010431491.1	3e-64	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4697	20	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72350.1	1e-40	M-type_MADS family protein