PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00871
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 222aa    MW: 25231.7 Da    PI: 10.4915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00871genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.3e-2197146255
         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 gy+GVr+++ +grW AeIrd       + r++lg+f+ta+eAa+a++aa+++l+g
  AA31G00871  97 GYRGVRRRP-WGRWSAEIRDrI----GKCRHWLGTFDTADEAARAYDAAARRLRG 146
                 8********.**********33....24*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.89397154IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2297155IPR016177DNA-binding domain
SMARTSM003802.6E-3197160IPR001471AP2/ERF domain
PfamPF008478.3E-1597146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2998154IPR001471AP2/ERF domain
CDDcd000189.47E-1798156No hitNo description
PRINTSPR003671.9E-1098109IPR001471AP2/ERF domain
PRINTSPR003671.9E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDYSNSLNFN NSLQHPVPFF FKPYNITVPT NPVTLDISSL FSLNSTPETS HRRVLDDSIA  60
AVVGEDVLYG HNNDKKVNEE TLTNGEEVKR RRKVKGGYRG VRRRPWGRWS AEIRDRIGKC  120
RHWLGTFDTA DEAARAYDAA ARRLRGSKAK TNFEISPVFP AAEVMMMTCK KRKKKRVMSG  180
RKCVKVSSVE QLFSDVGSSN DVSLISRFNN LNLDLELGFR VI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17961531371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188103KRRRKVKGGYRGVRRR
289104RRRKVKGGYRGVRRRP
3169173KKRKK
4169175KKRKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00871
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022553817.11e-61ethylene-responsive transcription factor ERF084-like
SwissprotQ9M8M59e-43ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A078HPH53e-60A0A078HPH5_BRANA; BnaC02g22960D protein
STRINGBra008460.1-P1e-54(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.11e-32ERF family protein