PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA32G00019

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

LBD

Protein Properties

Length: 230aa MW: 24694.7 Da PI: 7.5332

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA32G00019	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	106.8	1.7e-33	22	120	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqp..kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq.leqlkaelal 96 aC aCk+lrrkC+++C++apyf +eq +fa vhk+FGasnv+kll+++p+++r da++++ +eA+ar+ dP+yG++++il l+qq + q+++e+++ AA32G00019 22 ACGACKLLRRKCVAGCIFAPYFDSEQGgvTQFARVHKVFGASNVSKLLDHVPQHKRGDAVATISFEAQARLIDPIYGSCSHILFLHQQeVPQAETEAEA 120 7*********************994459***********************************************99999876526666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.75	21	125	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.9E-32	22	120	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MAIRPQLNST LKWKKSKSSC GACGACKLLR RKCVAGCIFA PYFDSEQGGV TQFARVHKVF 60 GASNVSKLLD HVPQHKRGDA VATISFEAQA RLIDPIYGSC SHILFLHQQE VPQAETEAEA 120 AATSGSSILD VGRIGASSVS VSVGSVYEYD QLSSIFETSS ASASWGIMEH EHQPIFGVSN 180 PNPNPNLWGS KSNNVGGDKY KSSDDDHQLQ PLPPQLSTTS TTTTSLIKPQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-30	23	123	12	109	LOB family transfactor Ramosa2.1
5ly0_B	2e-30	23	123	12	109	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA32G00019

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004510942.1	7e-47	LOB domain-containing protein 30-like
Swissprot	O81323	4e-42	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A1S2YWA9	2e-45	A0A1S2YWA9_CICAR; LOB domain-containing protein 30-like
STRING	XP_004510942.1	3e-46	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	2e-41	LBD family protein

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]