PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00171
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Dof
Protein Properties Length: 260aa    MW: 29780.5 Da    PI: 6.7176
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00171genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.94.7e-3857115260
      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                 +++a++cprC+s+ntkfCyynnyslsqPry+Ck+CrryWt GG+lrnvPvGgg+rknkk
  AA32G00171  57 PQEARNCPRCNSSNTKFCYYNNYSLSQPRYLCKSCRRYWTDGGSLRNVPVGGGSRKNKK 115
                 68999****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2556111IPR003851Zinc finger, Dof-type
PfamPF027013.7E-3359115IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.50961115IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106399IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDHHHQYNHD HHHDHEQYYH QMSLGNNNPY NNTINNTPQG PTNGSMLKEE QKMMARPQEA  60
RNCPRCNSSN TKFCYYNNYS LSQPRYLCKS CRRYWTDGGS LRNVPVGGGS RKNKKLLPNL  120
LLPPNSSKLI PDLNPPFLFT SSNPNNNNND LSLSFSVPLQ SQGHFSPSPS SSEGQNRLFT  180
APLGMIQFRQ EYEKGNVGEE EIVYRKDNDD DHHHHDKMMY HYGDDDDDEE EGRKKREEGG  240
SSNEMWSGII LGGHSGGPTW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00171
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463356.11e-82PREDICTED: dof zinc finger protein DOF4.1
RefseqXP_018463357.11e-82PREDICTED: dof zinc finger protein DOF4.1
RefseqXP_018463358.11e-82PREDICTED: dof zinc finger protein DOF4.1
SwissprotQ9M1618e-81DOF41_ARATH; Dof zinc finger protein DOF4.1
TrEMBLA0A1J3J2I77e-88A0A1J3J2I7_NOCCA; Dof zinc finger protein DOF4.1
STRINGXP_010428013.13e-79(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146951720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00940.12e-50Dof family protein