PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00177
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 413aa    MW: 46297.1 Da    PI: 6.2862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00177genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-13253298454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++N +f  Lr ++P+       K++Ka+ L  Av YI sL
  AA32G00177 253 SHVEAERQRREKLNRRFYALRAVVPNV-----SKMDKASLLSDAVSYIESL 298
                 899***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.4E-2534184IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.31E-17246309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.301249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.13E-15252303No hitNo description
PfamPF000101.5E-10253298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16253309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-15255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MNNFTPSPSL SSPMISFPYQ TPATVVSPLP ADLLHRTLRF IVENSPDQWA YVIFWRKMTD  60
TTQSDRSYFA WGDGHFCGNN NNICDKNVTS SSMECDLIMD GGDIDLFYAS SFHGTPGNEY  120
TGESLVWLTG VNALRFSDLE RAKEASLHGV HTFVYVPIHN GIIELGSSYM IQQNWNFINR  180
VKSIGTWFGS DLPIHNTLTG FDPKPESEIL QVGNQTGRKR RKNTETAEIV PVINNNNNNN  240
NNNNNNNNSP VMSHVEAERQ RREKLNRRFY ALRAVVPNVS KMDKASLLSD AVSYIESLKS  300
QIANLETQLG NVIGATPLCV DQVNNDNNIN GVFKVQVKIV GEEAMARIES ENVNHPTAAL  360
MCAFREMRCD IQNANALCVN QLMVQNAVVL VPCELRTEDG LRTTLLRHLS QHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-22252308763Transcription factor MYC2
5gnj_B4e-22252308763Transcription factor MYC2
5gnj_E4e-22252308763Transcription factor MYC2
5gnj_F4e-22252308763Transcription factor MYC2
5gnj_G4e-22252308763Transcription factor MYC2
5gnj_I4e-22252308763Transcription factor MYC2
5gnj_M4e-22252308763Transcription factor MYC2
5gnj_N4e-22252308763Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00177
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428091.11e-147PREDICTED: transcription factor bHLH14-like
SwissprotO230901e-138BH014_ARATH; Transcription factor bHLH14
TrEMBLR0GV071e-140R0GV07_9BRAS; Uncharacterized protein
STRINGBostr.7365s0026.1.p1e-148(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-139bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]