PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00192
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 277aa    MW: 31191.3 Da    PI: 8.5042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00192genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13105156155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+ +N+ ++ L++l+P++     ++ + a+i+  A+++Ik+L+
  AA32G00192 105 QRMTHIAVERNRRRLMNEHLNSLKSLMPPS---FLQRGDQASIVGGAIDFIKELE 156
                 79***************************9...89*****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.35E-8103152No hitNo description
Gene3DG3DSA:4.10.280.101.0E-12103158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.31E-15103172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.002104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MESSQLGMMR LNELEQQLGN FSESAIENKI SFLEMLQCIE PNHILQFQTL EPESSLTFQT  60
TKPDPGQTND SETKTGAKES TVVVKERRKR KRTRTPKNKD EVENQRMTHI AVERNRRRLM  120
NEHLNSLKSL MPPSFLQRGD QASIVGGAID FIKELEQLLL SLEEEKKRHD VHNENAKTAS  180
SSSSSSRACT TTTSSVSSIS TTSSEDGFTA RFGSGETAEV EATVIQNHVN LKVKCKRRQG  240
QILKAIVAIE DMKLTILHLT LSSSFHFAFY SFNLKVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691RRKRKR
2105116RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00192
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396347.11e-112transcription factor bHLH57
SwissprotQ9M1281e-107BH057_ARATH; Transcription factor bHLH57
TrEMBLE4MX541e-111E4MX54_EUTHA; mRNA, clone: RTFL01-16-P03
TrEMBLV4KIY21e-111V4KIY2_EUTSA; Uncharacterized protein
STRINGBostr.7365s0007.1.p1e-114(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146961721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.11e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]