PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA32G00197

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NAC

Protein Properties

Length: 450aa MW: 50942.5 Da PI: 6.681

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA32G00197	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.1	2.3e-42	4	143	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 p+G+rFhPt eel+++yLk+k+ g++ ++++i+e++i++++P +Lp + k+k++++ wyfFs+++ ++ ++k ++r+t+sgyWkatg d AA32G00197 4 PVGYRFHPTGEELINHYLKNKILGRSWLVDDAISEINICSYHPPSLPlNlgvsfrlglsKIKSNDHVWYFFSPKEYTSGKKKGTKRTTRSGYWKATGVD 102 89**********************999999***********5489*9999999999***************************** PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++k +++++g+kktLv+y+g+ ++g+ t Wvmhey++ AA32G00197 103 RKIKDKrgNRSEIGIKKTLVYYQGKVSNGVWTPWVMHEYHI 143 *9776777*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-45	2	161	IPR003441	NAC domain
PROSITE profile	PS51005	44.101	3	161	IPR003441	NAC domain
Pfam	PF02365	8.4E-26	4	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MENPVGYRFH PTGEELINHY LKNKILGRSW LVDDAISEIN ICSYHPPSLP LNLGVSFRLG 60 LSKIKSNDHV WYFFSPKEYT SGKKKGTKRT TRSGYWKATG VDRKIKDKRG NRSEIGIKKT 120 LVYYQGKVSN GVWTPWVMHE YHITCLPELQ RTYVICQIMY KGEDEIASGN FSSEPSQSFV 180 SIPTTVFGIS TPSEVEQPGQ EYFNGLGMND LDIPVVKEPM GVSLSELLGP NVYNDNNANE 240 HLQAPYIAHD DNEFLDELQH VDRGKVEYLF ASDQYMLTPV HNYNEHMPKE SFSGIIANSS 300 SDSDAESISA TSYEGTTSPS DSVGSSSNKH FPTCGDDFVE PYISKKSLES RSLQAYAITE 360 LHSQERHQRI RPLKQKVMKQ GKQLSKAFDP ALEESRMVKT EKKGWFIMEE ATDRKHRNPP 420 YIYLMNIIIS FILLVGLIGD IISVLLNANS

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MENPVGYRFH PTGEELINHY LKNKILGRSW LVDDAISEIN ICSYHPPSLP LNLGVSFRLG  60
LSKIKSNDHV WYFFSPKEYT SGKKKGTKRT TRSGYWKATG VDRKIKDKRG NRSEIGIKKT  120
LVYYQGKVSN GVWTPWVMHE YHITCLPELQ RTYVICQIMY KGEDEIASGN FSSEPSQSFV  180
SIPTTVFGIS TPSEVEQPGQ EYFNGLGMND LDIPVVKEPM GVSLSELLGP NVYNDNNANE  240
HLQAPYIAHD DNEFLDELQH VDRGKVEYLF ASDQYMLTPV HNYNEHMPKE SFSGIIANSS  300
SDSDAESISA TSYEGTTSPS DSVGSSSNKH FPTCGDDFVE PYISKKSLES RSLQAYAITE  360
LHSQERHQRI RPLKQKVMKQ GKQLSKAFDP ALEESRMVKT EKKGWFIMEE ATDRKHRNPP  420
YIYLMNIIIS FILLVGLIGD IISVLLNANS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-22	4	143	16	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269\|PubMed:21450938}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00426	DAP	Transfer from AT4G01550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA32G00197

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269\|PubMed:21450938}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_192064.1	1e-165	NAC domain containing protein 69
Swissprot	Q9M126	1e-166	NAC69_ARATH; NAC domain-containing protein 69
TrEMBL	A0A178V081	1e-164	A0A178V081_ARATH; NTM2
STRING	AT4G01550.1	1e-164	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1982	19	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	1e-139	NAC domain containing protein 69

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] He L, et al. Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance. Plant Mol. Biol., 2017. 93(4-5): p. 369-387 [PMID:27975189]