PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00365
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 353aa    MW: 38269.9 Da    PI: 7.9349
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00365genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.2e-0978101326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  e C+ ++r+G C +Gd C FaHg
  AA32G00365  78 GEVCPEYRRSGDCTRGDECGFAHG 101
                 589********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.46E-675105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.41875103IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-475102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-679103IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-679101IPR000571Zinc finger, CCCH-type
SMARTSM003562.5111134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000932Cellular Componentcytoplasmic mRNA processing body
GO:0010494Cellular Componentcytoplasmic stress granule
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDAICTDSGH IGNPTMDIKD YCYDSDSDDP YAGDHFRMYE FKIRRCTRSR SHDWTDCPFA  60
HPGEKARRRD PRRFQYTGEV CPEYRRSGDC TRGDECGFAH GVFECWLHPS RYRTEACKDG  120
KHCKRKVCFF AHSPRQLRLL PPENTLSVAG AGVGGGGCGN LIGNKSNRCC LFCCNSPTST  180
LLGLSHLSRS PSVSPPMSPA NKVAAFSRLS RRAAAASACG SVAYKDVLNE LICSLDSVSL  240
NEALAAAAVA SSSSPVTVPV STAARRVPWL SGEKDFQQKQ SCLQFGLSPS SSSYLNVQPP  300
PASFFSDEFT PRGGRISDFT AAATAMAARD VKNSFEVGSG GDPDLGWVND LLT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00365
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022564779.11e-150zinc finger CCCH domain-containing protein 61-like
SwissprotQ9FKW21e-142C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLA0A0D3E6F31e-148A0A0D3E6F3_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QGN21e-148A0A3N6QGN2_BRACR; Uncharacterized protein
STRINGBo9g059770.11e-149(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.11e-113C3H family protein