PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00368
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 201aa    MW: 22320.4 Da    PI: 10.148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00368genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.93.8e-212877255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAaka++aa+++++g
  AA32G00368 28 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAAKAYDAAAREFRG 77
                69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.1182885IPR001471AP2/ERF domain
SMARTSM003808.4E-372891IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-232886IPR016177DNA-binding domain
PfamPF008478.5E-152877IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-332885IPR001471AP2/ERF domain
CDDcd000185.11E-192885No hitNo description
PRINTSPR003671.5E-112940IPR001471AP2/ERF domain
PRINTSPR003671.5E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAPRHENASN VGNEGGYGGG RKMKREIHYR GVRKRPWGRY AAEIRDPGKK TRVWLGTFDT  60
AEEAAKAYDA AAREFRGSKA KTNFPLPGGV IEDSGINSTL VDIPVARENT RRIEMASRFP  120
FACHRQQYIS GGFCFDPARA AALRAELARV YPVRFEPVDI ELSIGIRATA KVESSTVSSV  180
VECKRRRELN LDLNLAPPVD V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-222886261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-222886564ATERF1
3gcc_A2e-222886564ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12035RKMKREIHYRGVRKRP
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00368
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867815.17e-82ethylene-responsive transcription factor 9
SwissprotQ9FE672e-82ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLD7MN182e-80D7MN18_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__388__AT5G44210.13e-81(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-62erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]