 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AA32G00373 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
| Family |
C2H2 |
| Protein Properties |
Length: 494aa MW: 53943.2 Da PI: 8.3827 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| AA32G00373 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.6 | 4.4e-05 | 72 | 92 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C++Cgk F r nL+ H r H
AA32G00373 72 CEICGKGFQRDQNLQLHRRGH 92
*******************88 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010150 | Biological Process | leaf senescence |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 494 aa
Download sequence Send
to blast |
MTISEVLETA SNGGSSFIQS SSTITTLIDH DESLINPPLV KKKRNLPGNP DPEAEVIALS 60
PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ RTSKEIRKRV YVCPEKTCVH 120
HHSSRALGDL TGIKKHFCRK HGEKKWKCEK CAKQYAVQSD WKAHSKTCGT REYRCDCGTI 180
FSRDKLINVN GGFDRRDSFI THRAFCDALA EETAKINAAS HLNNLAAAAA VGNAGINLNY 240
QYLMGTLIPQ PQPLQPFGPP QTNQNTITMS PHHHHHPFPP PQSASSSSSL SLWMGQNHSN 300
GQIAPLQPQP QDYDWVFGNE KASTCNNHHD ELITQAANAN ATSNAPTLSV SSLFSSDQTP 360
NANAVVSAAA NMSATALLQK AAQMGATSTT TTDPSAFLQG FQSKTSDQIT GDTTPINYDG 420
GEKFFALFGS NNVNDQEIGN ARNGVTVVSA IDDLQNYPWK RRRVDNGGDP NAGGQTRDFL 480
GVGVCHPSSI NGWN
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
