PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00404
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HSF
Protein Properties Length: 293aa    MW: 34530.1 Da    PI: 4.7351
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00404genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35201122103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+i+ed ++++++sws+++nsf+v+++++fa  +Lpk Fkh+nf+SFvRQLn+YgFkkv+ e+         weF++++F +g+k+ll++i+
    AA32G00404  20 FLTKTYNIVEDTSTNKIVSWSSENNSFIVWEPDSFALLLLPKCFKHNNFSSFVRQLNTYGFKKVDAER---------WEFANEYFLRGQKHLLKNIR 107
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+ks+
    AA32G00404 108 RRKSS 112
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.3E-5616109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.03E-3416109IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.7E-3716109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-182043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-185870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MADNLPVPLE GLNETGPPPF LTKTYNIVED TSTNKIVSWS SENNSFIVWE PDSFALLLLP  60
KCFKHNNFSS FVRQLNTYGF KKVDAERWEF ANEYFLRGQK HLLKNIRRRK SSSSQTQTQT  120
QTQTQTLGVE LEIQELKQGK QGLVSELMRL RKRQEGIKKY LLLMEERLKR TEEKQQMMVR  180
FFVRMIKSPS FLETLKKRDF QEIENGRKRR RVDDEEWQGM ISIDGIEDQE TLIKIEDEEY  240
CDFSEQFGDV CSHELHMATT MADEELDGVE IELDSEGLWK SLELNDELFV YEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-24410913129Heat shock factor protein 1
5d5v_B3e-24410913129Heat shock factor protein 1
5d5v_D3e-24410913129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195210KKRDFQEIENGRKRRR
2206210RKRRR
3207211KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00541DAPTransfer from AT5G43840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00404
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403174.11e-117heat stress transcription factor A-6a
SwissprotQ1PDN31e-107HFA6A_ARATH; Heat stress transcription factor A-6a
TrEMBLV4LQ791e-116V4LQ79_EUTSA; Uncharacterized protein
STRINGXP_006403174.11e-116(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156831416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43840.11e-104heat shock transcription factor A6A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]