PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00417
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 240aa    MW: 28227.3 Da    PI: 10.374
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00417genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.3e-0783130355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r h + Er RRd+ ++++  L +llP       +K +K +i+ekAv+ I +Lq
  AA32G00417  83 RRHMIKERIRRDKQKQSYLDLHSLLPIH-----TKSDKKTIVEKAVNQIGDLQ 130
                 458999*********************9.....8***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1075144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.73880129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-683134No hitNo description
Gene3DG3DSA:4.10.280.105.6E-784147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-585130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-586135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDHFFQDPIN WEENTLWDLV SGDGDKTVSP VNRRAFRAYV REPQESKTAA VSARNVNKRM  60
LNLVRKNWEE KKRAAAPERE KGRRHMIKER IRRDKQKQSY LDLHSLLPIH TKSDKKTIVE  120
KAVNQIGDLQ RLKRELERRI KALERKLDGK TEMCGRREVK FNVREPLSGI DSMIEVVKCL  180
KSMGTNLKSV HANFSSREFA ANITIETQIR EEEVEKTVER RLHETEWKLL FLPEAPFHGD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00417
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868383.11e-95transcription factor bHLH92
SwissprotQ9FIX54e-96BH092_ARATH; Transcription factor bHLH92
TrEMBLA0A178ULD23e-95A0A178ULD2_ARATH; BHLH92
STRINGfgenesh2_kg.390__1__AT5G43650.14e-95(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.18e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]