PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00423
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 137aa    MW: 15492.4 Da    PI: 6.0027
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00423genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-052850123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ F++   L  H++ H
  AA32G00423 28 YECTFCKRGFTNAQALGGHMNIH 50
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.72E-72554No hitNo description
Gene3DG3DSA:3.30.160.604.3E-52553IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00972850IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1362855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MEFERSSETG LVTVENRGTG TVVARRMYEC TFCKRGFTNA QALGGHMNIH RRDRLNNKSK  60
LQNVVVEDHD HEFDQLLLTH RCFPVNSRGY EQVVTTTTAA ANLSLRIGSM REDGFGFEMI  120
GENGVVQGDE IDLELRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00423
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865417.14e-34uncharacterized protein LOC9301491
TrEMBLD7MP519e-33D7MP51_ARALL; Zinc finger family protein
STRINGscaffold_800693.12e-33(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-33C2H2 family protein