PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00506
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 459aa    MW: 51054.1 Da    PI: 7.5064
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00506genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.7e-114469126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                ++++ C+f++rtG C+yG++C+++H+
  AA32G00506 44 PGERDCQFYLRTGLCSYGNSCRYNHP 69
                5789*********************8 PP
2zf-CCCH36.39.2e-1289113327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C +f++tG CkyG++Ck++H++
  AA32G00506  89 QPDCEYFLKTGACKYGSTCKYHHPK 113
                 789********************96 PP
3zf-CCCH35.41.8e-11134158327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C++++rtG C++G  CkF+H++
  AA32G00506 134 EKSCPYYMRTGMCRFGVACKFHHPQ 158
                 667********************97 PP
4zf-CCCH38.51.9e-12279302427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 ++Crff+ tGtCkyGd Ck++H++
  AA32G00506 279 SECRFFMNTGTCKYGDDCKYSHPK 302
                 78********************96 PP
5zf-CCCH32.41.6e-10322348127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C +fa++G+Ck+G++CkF H++
  AA32G00506 322 PGHPACGNFAAYGFCKFGSTCKFDHSM 348
                 57899********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.8784371IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-54370IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-94569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-54770IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-44969IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.89686114IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-686113IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-989113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-691114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-492112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6130158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126131159IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-5131158IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8133158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4136157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.502275303IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-7275302IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10278302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7279303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-7281302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6317347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197321349IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5321348IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-7323347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MTESQVKNST GSIQSPEKIE DSFRKMKVTE DNNVAQTSPY PDRPGERDCQ FYLRTGLCSY  60
GNSCRYNHPS HLPQGIVYYK DELPERIGQP DCEYFLKTGA CKYGSTCKYH HPKDRNGAGP  120
VLFNYLGYPM RQGEKSCPYY MRTGMCRFGV ACKFHHPQPI NGHSTYGVSS FPSLGFPYST  180
GLTMVSLPPA TYGAVPHPQV PQHQAYLPYM VAPPQGLLPP QAWPTYMLPQ RGINYTARTQ  240
HTSSNPIYNM KTQPDSSSSA SLPVSVTSHQ NFSERSGSSE CRFFMNTGTC KYGDDCKYSH  300
PKERILQASP NLLNPYVLPA RPGHPACGNF AAYGFCKFGS TCKFDHSMPL MNYNNTNLTM  360
SSLPSAYAPP VTTHLKISAP PSPSDSITGK IDEKNQSSEI EKHLSNGKPE EKNQSLEIEQ  420
HLSNGKPEEK NQSLEIEKQE ADLSEQESSE VQESSANSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00506
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413928.10.0PREDICTED: zinc finger CCCH domain-containing protein 26
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLD7LFN30.0D7LFN3_ARALL; Uncharacterized protein
STRINGXP_010413928.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.10.0zinc finger nuclease 2