PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA32G00599

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

LBD

Protein Properties

Length: 201aa MW: 22410.3 Da PI: 6.4904

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA32G00599	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	111.8	4.8e-35	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C +Ck+lrrkCak+Cv+ pyf+ e+ +++fan+hk+ Gasn +kll++lp ++r a+ +++y+A+ r+rdP+yG+v++i++lqqq+ +l+ael+ l+ AA32G00599 7 PCGGCKFLRRKCAKGCVFTPYFCYEDaASHFANIHKVLGASNFSKLLSNLPLHDRFYAALTITYQAHSRLRDPIYGCVSHIFSLQQQVVSLQAELVFLR 105 7*********************9868*****************************************************************9988 PP DUF260 99 ee 100 ee AA32G00599 106 EE 107 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.157	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.4E-32	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MGGLRSPCGG CKFLRRKCAK GCVFTPYFCY EDAASHFANI HKVLGASNFS KLLSNLPLHD 60 RFYAALTITY QAHSRLRDPI YGCVSHIFSL QQQVVSLQAE LVFLREEAST RFLQEDCTGP 120 NPGCDLMQQE KVLDQKVPQD SQSLFYQGCS GSDLAQISSA ADVPAVHGAA STFMAHSEPF 180 CSSNESFYYH EFMFPWSLSD Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-32	3	117	7	116	LOB family transfactor Ramosa2.1
5ly0_B	1e-32	3	117	7	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA32G00599

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002879319.1	1e-80	LOB domain-containing protein 14
Swissprot	Q9SJW5	2e-80	LBD14_ARATH; LOB domain-containing protein 14
TrEMBL	D7LD16	3e-79	D7LD16_ARALL; LOB domain protein 14
STRING	Bostr.24513s0089.1.p	3e-82	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31310.1	9e-83	LOB domain-containing protein 14

Publications ? help Back to Top
Jeon E, et al. LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis. Plant Cell Physiol., 2017. 58(12): p. 2190-2201 [PMID:29040694]