PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA32G00600

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 726aa MW: 80081.4 Da PI: 6.228

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA32G00600	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.3	0.00063	557	594	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq AA32G00600 557 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 594 67799************55......5566667777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	3.6E-32	6	165	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	5.14E-4	538	595	No hit	No description
PROSITE profile	PS50888	11.28	544	593	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-5	557	612	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-4	557	609	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence Send to blast
MGSTSQEILR SLCSNTDWKY AVFWKLNHRS RMVLTLEDAY YDNHEQNNPS EVKGYNVIPK 60 NMHGGHNAHD PLALAVAKMS YHVYSLGEGI VGKVAVSGEH QWVFPEYYDD CHSAFEFPNT 120 LESQISAGVK TILVVAVGSC GVVQLGSLRK VDENATLVTH IRHLFLALKD PLADHAANLM 180 QFNTKVPSEC LHVEPFPDCS GEVEKAMDIE ESDNLNQYKT KRSDSMPYDT PSYLLMEKAA 240 QLISGHEMVQ GSTSGSYNGV TYGFSVDMVD AKHENRLGTD IISDASHVRM ASGCKDPVVA 300 DPALLHYLRS QVLNNSSSSD LVIEADTLMT EQSYAGLHST VHDGPRTDKE SSHQNEVFQL 360 SESQGYKYLK GTECMLERKC HSSQFDALLS SGSTFAGSEL LEALGPAFKK PANGNEELVK 420 SEPGSTVRPT DDMSHSQLTF GTGPENLLDA VVANVSHNDG NIRNDIFSSR SVQSLITSVE 480 MGEPSGQKKH INVINQLPLA ETQQNSSDIC AAFSTIGFSS TCPSSSSDQF QTSLEMPKKH 540 KKRAKPGESS RPRPRDRQLI QDRIKELREL VPNGSKCSID SLLERTIKHM LFLQNVTKHA 600 DKLSKSANSK MQHKETGTQG SSCAVEVGGH LQVCSIVVEN LNKQGMVLIE MLCEECSHFL 660 EIANVIKSLD LIILRGITET HGEKTWICFV VESQNNKVMQ RMDILWSLVQ IFQPKAPGKC 720 VAMAQP

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence Send to blast

MGSTSQEILR SLCSNTDWKY AVFWKLNHRS RMVLTLEDAY YDNHEQNNPS EVKGYNVIPK  60
NMHGGHNAHD PLALAVAKMS YHVYSLGEGI VGKVAVSGEH QWVFPEYYDD CHSAFEFPNT  120
LESQISAGVK TILVVAVGSC GVVQLGSLRK VDENATLVTH IRHLFLALKD PLADHAANLM  180
QFNTKVPSEC LHVEPFPDCS GEVEKAMDIE ESDNLNQYKT KRSDSMPYDT PSYLLMEKAA  240
QLISGHEMVQ GSTSGSYNGV TYGFSVDMVD AKHENRLGTD IISDASHVRM ASGCKDPVVA  300
DPALLHYLRS QVLNNSSSSD LVIEADTLMT EQSYAGLHST VHDGPRTDKE SSHQNEVFQL  360
SESQGYKYLK GTECMLERKC HSSQFDALLS SGSTFAGSEL LEALGPAFKK PANGNEELVK  420
SEPGSTVRPT DDMSHSQLTF GTGPENLLDA VVANVSHNDG NIRNDIFSSR SVQSLITSVE  480
MGEPSGQKKH INVINQLPLA ETQQNSSDIC AAFSTIGFSS TCPSSSSDQF QTSLEMPKKH  540
KKRAKPGESS RPRPRDRQLI QDRIKELREL VPNGSKCSID SLLERTIKHM LFLQNVTKHA  600
DKLSKSANSK MQHKETGTQG SSCAVEVGGH LQVCSIVVEN LNKQGMVLIE MLCEECSHFL  660
EIANVIKSLD LIILRGITET HGEKTWICFV VESQNNKVMQ RMDILWSLVQ IFQPKAPGKC  720
VAMAQP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA32G00600

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010510215.1	0.0	PREDICTED: transcription factor bHLH155 isoform X1
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	R0HM95	0.0	R0HM95_9BRAS; Uncharacterized protein
STRING	Bostr.24513s0093.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]