PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00604
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 729aa    MW: 83916.4 Da    PI: 6.7443
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00604genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10154198554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     Er RR ++N++++ L+ l+P++     +K + a+iL   ++YI++L
  AA32G00604 154 PFTTERERRCHLNERYDALKLLIPNP-----TKGDRASILADGIDYINEL 198
                 5678**********************.....9***************998 PP
2HLH28.13.5e-09532572954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 Er RR + N +f  L++l+P++     +K + a+++  A+eYIk+L
  AA32G00604 532 ERERRVHFNARFIDLKKLIPSP-----TKSDRASTVGDAIEYIKEL 572
                 9*********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.2E-11147207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.48E-10147202No hitNo description
SuperFamilySSF474594.58E-13148219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.821149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-8152198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-8155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.697523572IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-11526589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-5529578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-9531583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-7531572IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-7532577No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MEATIDNNGN SFNELTSTDL IHQMIQESSS FDQPNWVTES HDFTNSGFLM NPLQDHHHNS  60
NTNSSLPDLL NLLNLPKCSI SLPNSNLSDI ITTSCLTYDP LYHLNPPSQT PMIHMNPLET  120
QENENENENV IFEFSKDING CLQRKGRGKR KNKPFTTERE RRCHLNERYD ALKLLIPNPT  180
KGDRASILAD GIDYINELRR RVDELKYLVE KKRCGRHKNK RQKTQEDHKN SNNDDEEMEK  240
KVEIGLNDQC YSNKNLLRCS WLQRKSKVTE VDVRIVDDEV TIKIMQKKKI NCLFFVSKVI  300
DELQLDLHHV TGGQIGEHYS FLFNTKIYEG SIIYAKELSE FHLSPQDSAP VTASMQFQIN  360
PPCDQFHNNN INLMHQTVHD SSYTHPPQAN WDTNYQDFIN LGPNSTTPDL LSLLHLPRCS  420
LPPSMLPNSS ISFPNSTFSD IMSSSAVMYD PLFHLNFPLQ PRDQAFQHNQ RNGSSSLLGV  480
EDHQIEANRG ENPMFYQENN QMQFENGILD YNNGLKRKGR GSSGKTRIFP TERERRVHFN  540
ARFIDLKKLI PSPTKSDRAS TVGDAIEYIK ELLRSIEYLK MLLENKRLGK QRNKRARTAA  600
EEEDDTVNYR PQSEVDQTNF SKNNNSLRCS WLKRKSKVTE IDVRIIDDEV TIKLVQKKKI  660
NCLLFTTKVL DQLQLDLHHV AGGQIGEYYS FLFNTKISEG SCVYASGIAD TVMEVVEKQY  720
MEALPNNGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198222RRRVDELKYLVEKKRCGRHKNKRQK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00604
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024003913.11e-175transcription factor bHLH10
SwissprotQ84TK11e-169BH010_ARATH; Transcription factor bHLH10
TrEMBLV4M9D81e-174V4M9D8_EUTSA; Uncharacterized protein
STRINGXP_006410254.11e-174(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.11e-146bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]