PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA32G00683

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

LBD

Protein Properties

Length: 185aa MW: 20660.5 Da PI: 7.2024

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA32G00683	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.9	4.2e-44	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da++slv+eA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++ AA32G00683 8 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQA 106 7***********************************************************************************************998 PP DUF260 100 e 100 e AA32G00683 107 E 107 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.804	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-43	8	105	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ 60 RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ LAVAQAEILC IQMQHEPTLQ 120 SHHQVLDLDQ DHKALLLHNN NNNNLNNNNN NNNLSYAMSS FASPSSVMQM QMQMQDPLKQ 180 ESLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-49	4	118	6	124	LOB family transfactor Ramosa2.1
5ly0_B	4e-49	4	118	6	124	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA32G00683

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009132714.1	1e-108	PREDICTED: LOB domain-containing protein 12-like
Refseq	XP_013642854.1	1e-108	LOB domain-containing protein 12-like
Refseq	XP_013733963.1	1e-108	LOB domain-containing protein 12-like
Refseq	XP_018438152.1	1e-108	PREDICTED: LOB domain-containing protein 12
Refseq	XP_022571595.1	1e-108	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	1e-108	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A397ZVB7	1e-108	A0A397ZVB7_BRACM; Uncharacterized protein
STRING	Bra022780.1-P	1e-108	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	7e-99	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]