PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00712
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 393aa    MW: 45623.4 Da    PI: 8.425
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00712genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044155178123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 y C+ Cg+ ++++ +Lk+H +  H
  AA32G00712 155 YICSVCGRKCKTNLDLKKHFQQlH 178
                 89*****************76655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10103.0E-775128IPR029060PIN domain-like
PROSITE profilePS5015710.616155183IPR007087Zinc finger, C2H2
SMARTSM003550.006155178IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157178IPR007087Zinc finger, C2H2
CDDcd061671.29E-12167309No hitNo description
Gene3DG3DSA:3.40.50.10103.0E-7230294IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSLFCNSVDT SYLKPILPRK SHFFSVSVNV PVRIHNPSVA SFRRYRSWSI KSCHYSASSS  60
EIDMVRNKEG VFTPKEKKVV VLWDLDNKPP RGPPYEAATA LRKVAEKLGR VVEISAYANR  120
HAFIHLPQWV VQERRERRQL DFLERKGEIR PSEPYICSVC GRKCKTNLDL KKHFQQLHER  180
ERQKKMNRLR SLKGKKRQKY KERYISGNEK YNDAARSLLT PRVGYGLDAE LRRAGVHVKT  240
VEDKPQAADW ALKKQIQHSM TRGIDWLVLV SDDKDFSDML RKAQEANLET VVVSDRDRAL  300
GRYADVWIPW IGVEKGEITD ADLVPNRRQQ FEDSEGEREA GDELFSLSYY DDGTTEITVE  360
SDGFGKFNVS AFSEDEWMED DDYTRSDSED ELF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00712
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200014.10.0C2H2-like zinc finger protein
TrEMBLA0A178UA350.0A0A178UA35_ARATH; Uncharacterized protein
TrEMBLQ9FJ910.0Q9FJ91_ARATH; AT5g52010/MSG15_9
TrEMBLR0GTZ40.0R0GTZ4_9BRAS; Uncharacterized protein
STRINGBostr.15774s0347.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.10.0C2H2-like zinc finger protein