PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00868
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 799aa    MW: 89052.7 Da    PI: 5.9825
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00868genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-075077127
                --S---SGGGGTS..--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartG..tCkyGdrCkFaHgp 27
                +kt+lC+ ++r+    C++G+ Ck+aHg+
  AA32G00868 50 WKTSLCS-YFRSQvsPCSHGSECKYAHGE 77
                8******.777789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.67E-64782IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-114783IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9534978IPR000571Zinc finger, CCCH-type
SMARTSM003560.00124977IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-55077IPR000571Zinc finger, CCCH-type
CDDcd005903.15E-5144209No hitNo description
SuperFamilySSF549289.46E-7147218IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3302.1E-6147209IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168735.875247799IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.65E-27249275IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.65E-27307446IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.65E-27482566IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1505.1E-46492569IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1505.1E-46618738IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059581.4E-7686734IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300694726IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1505.1E-46774799IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
LPSDDTSVLT SDPQPTDDVD VLGEKRKRSD VVDDEKNNVE PSESKIHPLW KTSLCSYFRS  60
QVSPCSHGSE CKYAHGEEEL RQRPDKTWDP TSERVKKAMR MSENEGECAE KGEESDILIT  120
EQMMDENDDE GSGDSVLDPS LVKCLVHLPT KWHSDDLRKF VKEQGVQFKS AKKKRGMSVG  180
FVTFEDAEQL QSGVEILDGK TIGKQNLKIA DVIPRTIDKT MKTAMANGAS ENGTKSDSVK  240
IKSAREAVTP LAHLSYAEQL EQKKASITQM LKKLTRNARK ACPNGISLPE WVLKSKEIGG  300
LPCKLEGILE SPITNGYRNK CEFSVGYSIQ GKPTVGFMLG NFREGVTAVE EPVDCPNISK  360
IACQYASIFQ TFLQNSSFPV WNRFKNCGFW RQLTVREGRK PGVFSADEDA DSRIAEVMLI  420
VQFCSTGCDE TKVASEFKEM ARAFAQGARA STPNLPLTAF VVQDHQGISN VAPPDAPLQL  480
VPIPILDNGT NQEQTSNVLT ETRIHDYISN LRFSISPTAF FQVNTVAAEK LYSLAGDWAD  540
LGPDTLLFDI CCGTGTIGLT LAHRVGYRHR NECFSCIRCP MECKDQWHKQ LQAEDVMSSL  600
LKEYLDVSQM EEIKPPSNVD DLDKQISSTE ENTSKENSSD VKETTNPEHV DDQNLPHCSG  660
NSEEELQKKE QKEPSPEAER SIKPKFKNVV AIVDPPRSGL HPIVLKALRT HPRLRRLVYI  720
SCNPETLVAN AIELCTPSQD NVNKGNKGNR GWRKMSSAGL ARHRTKSMPP SEPFRPVKAM  780
GVDLFPHTDH CEMVMLLER
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00868
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521770.10.0PREDICTED: zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A178VUA70.0A0A178VUA7_ARATH; Uncharacterized protein
TrEMBLD7LHM30.0D7LHM3_ARALL; Predicted protein
STRINGXP_010521770.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120031516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]