PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00883
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 244aa    MW: 26194 Da    PI: 7.4703
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00883genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036102124123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++Fs+   L  H  +H
  AA32G00883 102 YECKTCNRTFSSFQALGGHRASH 124
                 99**********99999998887 PP
2zf-C2H2140.00014167189123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  Fs+   L  H+r+H
  AA32G00883 167 HECSICGSEFSSGQALGGHMRRH 189
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.3E-13101126IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-9101124No hitNo description
SMARTSM003550.063102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.074102129IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-4162189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.02E-9162189No hitNo description
PfamPF139127.3E-12166190IPR007087Zinc finger, C2H2
SMARTSM003550.02167189IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.889167194IPR007087Zinc finger, C2H2
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTGQDEIGSD QTQIIKGKRT KRQRSSSTFM VATTITSTSS SADEYNSSAV TSPIISTDCT  60
EEEEDLAICL IMLARGNFPT PDLKNSTKLL QSDHQNSNFY VYECKTCNRT FSSFQALGGH  120
RASHKKPKSP LKSSGVEEGQ NGNTTKVSGS ALASNTSNNI SKGNKVHECS ICGSEFSSGQ  180
ALGGHMRRHR TATTASPGPG ANSEVEKLQS KYLPLDLNLP APEESSKFEG IVFSATPALV  240
DCHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00883
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880944.21e-113zinc finger protein ZAT5
SwissprotQ681X41e-112ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A087GR311e-111A0A087GR31_ARAAL; Uncharacterized protein
STRINGA0A087GR311e-112(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-105C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]