PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00958
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 351aa    MW: 40089.2 Da    PI: 5.7644
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00958genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.22.9e-48141401128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                 l pGfrF+Ptd el+++yL++k++g+++++  vi++v+iyk+ePwdLp ++  ++e+ew++F+ r +ky++g++++rat+ gyWkatgk+++v+s +++
  AA32G00958  14 LFPGFRFSPTDIELISYYLRRKIDGDENSV-AVIAQVEIYKFEPWDLPgESKLKSENEWFYFCARGRKYPHGSQSRRATQLGYWKATGKERNVKS-GNQ 110
                 579************************999.89***************543334678**************************************.999 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  vg+k+tLvf+ grap+ge+t+W+mhey +
  AA32G00958 111 IVGTKRTLVFHIGRAPRGERTEWIMHEYCI 140
                 ****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-546156IPR003441NAC domain
PROSITE profilePS5100552.72514157IPR003441NAC domain
PfamPF023654.3E-2416139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSKEAEMSIA VSTLFPGFRF SPTDIELISY YLRRKIDGDE NSVAVIAQVE IYKFEPWDLP  60
GESKLKSENE WFYFCARGRK YPHGSQSRRA TQLGYWKATG KERNVKSGNQ IVGTKRTLVF  120
HIGRAPRGER TEWIMHEYCI NDTPSQDALV VCRLRKNTDF RTTSTRKLVE DNVDVPEPDT  180
ARNSYSPYET EHKLLNEELA ESSNAFEEQV DDSDDDCYAE IMKDDIINLD EAAAAAWKTT  240
GEVLKANQTV LTNHGPISQE TLVRETAAAL TEKCDIKNES NQRMNCYALF KINNNEDLAA  300
GCRIFNHFRI KNYVDIRQKL KNVITNTVFL VTVLLSVFWV VLTAKEKGVV V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-421315719168NAC domain-containing protein 19
3swm_B3e-421315719168NAC domain-containing protein 19
3swm_C3e-421315719168NAC domain-containing protein 19
3swm_D3e-421315719168NAC domain-containing protein 19
3swp_A3e-421315719168NAC domain-containing protein 19
3swp_B3e-421315719168NAC domain-containing protein 19
3swp_C3e-421315719168NAC domain-containing protein 19
3swp_D3e-421315719168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00958
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180298.11e-152NTM1-like 8
SwissprotQ9XIN71e-153NAC40_ARATH; NAC domain-containing protein 40
TrEMBLA0A1J3G9A51e-155A0A1J3G9A5_NOCCA; Protein NTM1-like 8 (Fragment)
STRINGAT2G27300.11e-151(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104532533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.11e-146NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]