PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA32G00999

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

YABBY

Protein Properties

Length: 142aa MW: 16046.1 Da PI: 10.1906

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA32G00999	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	167.7	8.3e-52	2	131	23	170
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPek 121 vsvP +slf +vtvrCGhCt+l svn+a + q l+ + +++ + + ++ s +++ s s+ +++ ++ + v+rPPek AA32G00999 2 EVSVPCSSLFDIVTVRCGHCTNLWSVNMAASLQSLSNPNF---------QAT-NYTIPEYGSSSRGHNKVS--------SRISSRTMTDQRVVNRPPEK 82 69**********************99988887776663.........111.111111222222222222........223334444445689* PP YABBY 122 rqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 rqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl AA32G00999 83 RQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 131 *********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.7E-58	2	131	IPR006780	YABBY protein
SuperFamily	SSF47095	2.49E-8	75	125	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.6E-5	78	125	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MEVSVPCSSL FDIVTVRCGH CTNLWSVNMA ASLQSLSNPN FQATNYTIPE YGSSSRGHNK 60 VSSRISSRTM TDQRVVNRPP EKRQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN 120 WAHFPHIHFG LMLESNKQAK LA

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA32G00999

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006295133.1	1e-94	axial regulator YABBY 5
Swissprot	Q8GW46	6e-95	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	R0FYE4	2e-93	R0FYE4_9BRAS; Uncharacterized protein
STRING	Cagra.11302s0003.1.p	4e-94	(Capsella grandiflora)
STRING	XP_006295133.1	4e-94	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-97	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]