PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G01080
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 200aa    MW: 22802.9 Da    PI: 4.5894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G01080genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.2e-161463255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+G r ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+  ++g
  AA32G01080 14 VYRGARMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAAITIKG 63
                699999988.**********843...6*********************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.8131471IPR001471AP2/ERF domain
PfamPF008475.3E-101463IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-301472IPR001471AP2/ERF domain
SMARTSM003803.8E-361477IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-211472IPR016177DNA-binding domain
PRINTSPR003672.9E-101526IPR001471AP2/ERF domain
CDDcd000181.15E-321573No hitNo description
PRINTSPR003672.9E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MVESHKRVLE VDKVYRGARM RSWGKWVSEI REPRKKSRIW LGTFPTAEMA ARAHDVAAIT  60
IKGTSAILNF PELVDSLPRP LSSSPRDIQA AAAKAALMDF KTTPFQCNPN LKIDSEKTLS  120
EECRESVVEG DRVSEELEEI VELPSLNELK SEFSLFDSLE GLVLTPPWLD IDSSQQGYYT  180
YQDVSMMDSV FQETFLWNFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1815721573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G01080
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294983.11e-72ethylene-responsive transcription factor ERF042
SwissprotQ52QU18e-66ERF42_ARATH; Ethylene-responsive transcription factor ERF042
TrEMBLR0FYP12e-71R0FYP1_9BRAS; Uncharacterized protein
STRINGCagra.21659s0001.1.p4e-73(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25820.18e-62ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]