PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G01237
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 240aa    MW: 27163.4 Da    PI: 9.6816
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G01237genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-0585107123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k Fs++  L  H++ H
  AA32G01237  85 FSCSYCKKEFSTSQALGGHQNAH 107
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.6E-581111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.77E-782112No hitNo description
PfamPF139121.6E-685109IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.92685112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MELNLTTPTS CSSSSISSST HEIPPRTGFL TNTNEKLKKK VAAEPAIETP RLEYRFLLNE  60
NIRNSSLKAV DEAEGTKTEG KQRMFSCSYC KKEFSTSQAL GGHQNAHKQE RALAKRRKEI  120
EIDHPGLSFY NPYQPSGSQT PYSGISYSNG LQYDLGVRYN PNIAKSKPYP FNMFRYRMGY  180
RGLNINSNLP PLSNLRVQKT NDLSKNLISN LEDNIRMNNQ QGQKQAQTET DSEIDLSLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G01237
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125391.19e-96PREDICTED: uncharacterized protein LOC103850401
TrEMBLA0A398AC282e-94A0A398AC28_BRACM; Uncharacterized protein
TrEMBLM4EJE82e-94M4EJE8_BRARP; Uncharacterized protein
STRINGBra028914.1-P3e-95(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.13e-62C2H2 family protein