PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA33G00139
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GATA
Protein Properties Length: 203aa    MW: 22579.2 Da    PI: 6.342
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA33G00139genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.55.2e-2098132135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++C tt+TplWR+gp+g+k+LCnaCG++++k+++
  AA33G00139  98 CASCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 132
                 ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.02292128IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-2092144IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-1392133No hitNo description
Gene3DG3DSA:3.30.50.101.8E-1695132IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.15E-1497129No hitNo description
PfamPF003201.2E-1798132IPR000679Zinc finger, GATA-type
PROSITE patternPS00344098123IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGYQTNSTFS MFFSSENEGV FDEHNQNQNF DPYYNNNNYN NLSSSSSSSS VDCTLSLATP  60
SSRHLSDETN DNGTWNFFQS KTTSFKKSSG DVNVGRRCAS CDTTSTPLWR NGPRGPKSLC  120
NACGIRFKKE ERRATARNLT VSGGASSAAG IPATEYPYNG GGNYYNHHRV NYFSPAPENE  180
YSYVDDVRYH DSDVTTASFL SWN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA33G00139
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002886168.14e-74GATA transcription factor 20
SwissprotQ9ZPX01e-67GAT20_ARATH; GATA transcription factor 20
TrEMBLD7LBB61e-72D7LBB6_ARALL; Predicted protein
STRINGBostr.18351s0307.1.p2e-75(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-49GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]