PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA33G00259
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 398aa    MW: 43940.9 Da    PI: 6.3138
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA33G00259genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93e-07127147526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C++f++ G Ck Gd+C F+Hg
  AA33G00259 127 ACPDFRK-GGCKKGDTCEFSHG 147
                 7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.0E-5122148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.84123149IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-5127147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4127149IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.568157181IPR000571Zinc finger, CCCH-type
SMARTSM003560.53157180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MMIGETQRAY PTVHIPPWPL SDDFTATDLY SPVIGSPDGG NSNVLETLTA LQRYLPSNEP  60
DPDSDPDLSG PDSPIDAYSC DHFRMYEFKV RRCARGRSHD WTECPYAHPG EKARRRDPRK  120
FHYSGTACPD FRKGGCKKGD TCEFSHGVFE CWLHPARYRT QPCKDGGNCR RRVCFFAHSP  180
DQLRVLPQQS PDRVDSFEGM SPIRQSCSRA FQFSISPSSG SPPMSPRADS EIQSLSRSLG  240
GNSVSDVVSL SRSLGGNSVN DVVSLSRSLG GNSVNDVVAS IRNLQLNKVK SLPSSYNNQM  300
RCYGSGFGSG SPRGSVLGPG FRSLPTTPTR PEIGYLDIWE TGLEEEPVME RVESGRELRA  360
KMFEKLSKEN CLDRVDPDPN QGSGEADPDL GWVSELVM
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA33G00259
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013743556.10.0zinc finger CCCH domain-containing protein 20-like
RefseqXP_013743557.10.0zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A3P6EV560.0A0A3P6EV56_BRAOL; Uncharacterized protein
STRINGBo7g005390.10.0(Brassica oleracea)
STRINGXP_006408900.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-164C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]