PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA33G00296

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Protein Properties

Length: 217aa MW: 25404.1 Da PI: 6.534

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA33G00296	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.9	5.6e-11	90	172	2	76
EEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 k+lt sdv+ grl+l kk +++ +++ e++++ ++ ++g+++e+k+++++k + vl++GW++Fv++ +L+ AA33G00296 90 HKQLTESDVNGGqGRLMLEKKEVNDKflsrlqknEIPGVEGVDVLVYGPNGKVYEMKFKIWNKN-TPVLANGWSKFVEDYELEK 172 58999999987769******9888999887764444499*************999985.789**********9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03754	8.9E-6	87	166	IPR005508	B3 domain-containing protein
CDD	cd10017	8.65E-13	87	171	No hit	No description
SuperFamily	SSF101936	7.46E-13	88	172	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-12	89	172	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	8.501	90	198	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MAENYPPDHE IKEDPQEYSN SDEIKEDKCE VGDKNPKLVI KKRKIVEEED KTQETLKLRL 60 ERIIKNKNGD QPEIPPAHII GISHYGKCIH KQLTESDVNG GQGRLMLEKK EVNDKFLSRL 120 QKNEIPGVEG VDVLVYGPNG KVYEMKFKIW NKNTPVLANG WSKFVEDYEL EKYRNVIKIW 180 MFKAWKDGQI CFAIDSLRFD DITYPLNKRI FKDIFES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	43	PKLVIKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA33G00296

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2103	18	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03170.1	3e-32	B3 family protein