PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA343G00002
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 131aa    MW: 14965.3 Da    PI: 7.2312
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA343G00002genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-182979155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  AA343G00002 29 PSYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDVAALAIKG 79
                 57*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.79E-312989No hitNo description
PfamPF008471.2E-122979IPR001471AP2/ERF domain
SMARTSM003809.2E-383093IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-223088IPR016177DNA-binding domain
PROSITE profilePS5103222.8133087IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-313088IPR001471AP2/ERF domain
PRINTSPR003673.4E-113142IPR001471AP2/ERF domain
PRINTSPR003673.4E-115369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MNRKRERDDH DYDHDHDHHH DDVVSKHHPS YRGVRMRQWG KWVSEIREPR KKSRIWLGTF  60
STAEMAARAH DVAALAIKGV SPHLNFPHLA YHFPRPATAH PKDIQAAAAA TATAAVEMET  120
LSPDNDDDAF X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-192488873Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA343G00002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516772.16e-48PREDICTED: ethylene-responsive transcription factor ERF038
SwissprotQ9ZQP36e-47ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLD7LIJ51e-45D7LIJ5_ARALL; Uncharacterized protein
STRINGXP_010516772.12e-47(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.11e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]