PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA351G00002
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 176aa    MW: 19595.9 Da    PI: 8.6911
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA351G00002genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.1e-111061461055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  AA351G00002 106 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 146
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.8596145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-1497163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-13101156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.58E-11105150No hitNo description
PfamPF000104.3E-8106146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
KNKRGGKGKR NQKNIEKING ENEEEEGEKV QKRKSGGMMS RQNSSTTFCS EDIDDSNCDL  60
EVAINGGGDA SSSKEDETEA SKALNLNGKT RASRGAATDP QSLYARKRRE RINERLRILQ  120
NLVPNGTKVD ISTMLEEAVH YVKFLQLQIK LLSSDDMWMY APIAFNGMDL GLNAPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA351G00002
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138221.19e-87PREDICTED: transcription factor bHLH85-like
SwissprotQ84WK04e-85BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A1J3GYB96e-86A0A1J3GYB9_NOCCA; Transcription factor bHLH85
STRINGBra036969.1-P3e-86(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.13e-69ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]