PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA35G00063
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Trihelix
Protein Properties Length: 285aa    MW: 32317.4 Da    PI: 6.7983
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA35G00063genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.81.8e-1565146286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 W+++ + +Liea  ++  +l+rg+l++++W+ev++++   ++ g  +s +qCk++++ l+k+yk +k+  +       s++++f++l+
  AA35G00063  65 WSEDATATLIEAWGDRYVKLNRGNLRQNDWKEVADAVnssHSNGRPKSDVQCKNRIDTLKKKYKTEKAKLSP------SSWRFFNRLD 146
                 *************************************999999999*********************99986......46*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.2E-2663147No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MTSPPVINVR PLITFPFFSF SLSSHPITFS LSTFLVSSSS SILSYAFCAH LTLSHRPPAG  60
REDWWSEDAT ATLIEAWGDR YVKLNRGNLR QNDWKEVADA VNSSHSNGRP KSDVQCKNRI  120
DTLKKKYKTE KAKLSPSSWR FFNRLDVLIG PVLKKSSGGV VKSASMNPNL NPTGSKSTGS  180
SLDDDDDDDD DDDDETGDWG FVARKHRRVE EVDLSEGSAC RELARAILKF GEVYERIEGT  240
KQQMMIELEK QRMEVTRELE LQRMNMLMEM QLELEKSKHR KYGSG
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA35G00063
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543714.11e-121PREDICTED: trihelix transcription factor ASIL2 isoform X2
SwissprotQ9LJG83e-31ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLD7LYY31e-120D7LYY3_ARALL; Transcription factor
STRINGBostr.19424s1046.1.p1e-121(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.13e-96sequence-specific DNA binding transcription factors