PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA35G00070
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NF-X1
Protein Properties Length: 881aa    MW: 98059.6 Da    PI: 8.3167
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA35G00070genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.36e-07237265220
    zf-NF-X1   2 G..........kHkCqklCHeGpCppCpq 20 
                 G          +HkC ++CH G CppC++
  AA35G00070 237 GnvcdrvldcdIHKCTEICHDGACPPCRE 265
                 555555555559***************85 PP
2zf-NF-X117.87.1e-06427451119
    zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                 CG      +HkC+++CH GpC pCp
  AA35G00070 427 CGrklrcrNHKCSSPCHQGPCAPCP 451
                 777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.27E-582153No hitNo description
PROSITE patternPS01359083147IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.06E-4182230No hitNo description
SMARTSM004388.1194212IPR000967Zinc finger, NF-X1-type
PfamPF014222.5194211IPR000967Zinc finger, NF-X1-type
CDDcd060088.71E-9236284No hitNo description
SMARTSM004388.4E-5246265IPR000967Zinc finger, NF-X1-type
PfamPF014226.3E-4246264IPR000967Zinc finger, NF-X1-type
CDDcd060085.50E-7289329No hitNo description
SMARTSM004380.046299318IPR000967Zinc finger, NF-X1-type
PfamPF014220.051299317IPR000967Zinc finger, NF-X1-type
CDDcd060088.42E-10343392No hitNo description
SMARTSM004380.14353373IPR000967Zinc finger, NF-X1-type
PfamPF014220.014353372IPR000967Zinc finger, NF-X1-type
CDDcd060081.38E-6396444No hitNo description
SMARTSM004380.23406425IPR000967Zinc finger, NF-X1-type
PfamPF014220.019406424IPR000967Zinc finger, NF-X1-type
CDDcd060086.12E-11423471No hitNo description
PfamPF014220.002427451IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0047433452IPR000967Zinc finger, NF-X1-type
SMARTSM0043820490511IPR000967Zinc finger, NF-X1-type
PfamPF014224.8500510IPR000967Zinc finger, NF-X1-type
SMARTSM0043813601634IPR000967Zinc finger, NF-X1-type
PfamPF014220.18601612IPR000967Zinc finger, NF-X1-type
SMARTSM004380.11644662IPR000967Zinc finger, NF-X1-type
PfamPF014220.31645661IPR000967Zinc finger, NF-X1-type
SMARTSM0043821707728IPR000967Zinc finger, NF-X1-type
PfamPF014222.1709721IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MAGSTTVSCW KPPPQAKVPE QNISESDSDS GSDSDNNHNR HDDLSNSIFK AYLECHSSSS  60
PTSIDLAKIQ SFLSSSSSGA VSCLICLERI KRTDPTWSCT SICFAVFHLF CIQSWARQSL  120
DLQAARAVTR PSFNATDAVA VWNCPKCRSV YQKSEIPRRY LCYCGKEEDP PADNPWILPH  180
SCGEVCERPL SNNCGHCCLL LCHPGPCASC PKLVKAKCFC SGVEEVRRCG HKEFSCGNVC  240
DRVLDCDIHK CTEICHDGAC PPCRERAIYR CCCGKVKEEK DCCERVFRCE AACENMLNCG  300
KHVCEKGCHS GECGLCPYQG KRSCPCGKKF YQGLSCDVAA PLCGGTCDKV LACGHHRCPE  360
RCHRGPCLET CRTVVTKSCR CGGTKKQVPC HQEVACERRC QRVRDCARHA CRRRCCDGDC  420
PPCSEVCGRK LRCRNHKCSS PCHQGPCAPC PIMVTISCAC GATHFEVPCG TETNQKPPRC  480
RKLCHITPLC RHGPNLKPHK CHYGACPPCR LPCGEEYPCG HQCKLRCHGP RPPPNRDFML  540
KPTKKMLNIH VESTPGSPCP NCPELVWRPC VGHHLAAERM MVCSDKTQFA CDNLCGNPLP  600
CGNHYCTFTC HPLEIRSSTS GFDKRSMSCE KCALHCQKER PPQCQHPCPL RCHPGDCPPC  660
KTLVKRSCHC GAMVHAFECI YYNTLSANDQ TKARSCKGPC HRKLPNCTHL CPEICHPGEC  720
PLPDKCGKKV IIRCKCLTLK KERLCQDVQA AYRATGSDPK DVPKSQFGIG LLPCDAGCKS  780
KTQVAESVLQ QRKVQEVEEK EEASGKNSTK RRKRRERGQE LKETSRLQKL AMATKKVLMV  840
LLFMAALVAV SYYGYNGLLW VSDWMNEVEK QRQKSKRYPR F
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA35G00070
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019090669.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A087G5210.0A0A087G521_ARAAL; Uncharacterized protein
STRINGBostr.13129s0405.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors