PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA361G00005
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 303aa    MW: 34316.1 Da    PI: 7.585
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA361G00005genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.11e-33742141128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 
                  lp+G++F+P+d+e++  +L++k+++++      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      + +
  AA361G00005  74 LPAGVKFDPSDKEIL-MHLEAKISSDNrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVStdeegnETR 167
                  799***********9.89*****999956644322..22222333336**********.566677888******************733345444788 PP

          NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  W++tgk+++vls ++ + g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  AA361G00005 168 WHKTGKTRPVLS-QSGEAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 214
                  ************.8889**********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3668233IPR003441NAC domain
PROSITE profilePS5100532.48874233IPR003441NAC domain
PfamPF023651.4E-1475214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSWCNNSDTN YDLNLERVNS NSNDIIHQSQ SCVTSRSNSK MILNSSSLIT CPSCGHKIHQ  60
QEEQVGSIKD LPSLPAGVKF DPSDKEILMH LEAKISSDNR KLHPLIDEFI PTLEGENGIC  120
YTHPEKLPGV SKDGQVRHFF HRPSKAYTTG TRKRRKVSTD EEGNETRWHK TGKTRPVLSQ  180
SGEAGFKKIL VLYTNYGRQK KPEKTNWVMH QYHLGHSEDE RDGEPVLSKV FYQTQPRQCA  240
GSNQSKPKNH LNLNRFSYEN MQTGFGYEEG GNSEEIEGDD GSCSFIGFTC DASKVKENFI  300
KNQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA361G00005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458762.10.0PREDICTED: NAC domain-containing protein 10
SwissprotF4HY610.0NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A087HRG60.0A0A087HRG6_ARAAL; Uncharacterized protein
STRINGXP_010478220.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.10.0NAC domain containing protein 10