PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA36G00041
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 397aa    MW: 45196.2 Da    PI: 7.5208
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA36G00041genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.5e-161698997
                HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                + + +  l +p +f  +h  +  + ++t +l+    ++W+v +  rk+ + +++t GW+eF+++n+L +g+f++F +dg+++f   v+++
  AA36G00041 16 SESCTESLAIPPSFN-QHlRN--PLPRTAKLQGCGPKVWKVSM--RKRHEYIYFTIGWREFAEENDLTDGEFLTFVYDGSRTF--EVSIY 98
                344445699*****8.55243..4899****************..********************************997777..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.35E-208103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-208101IPR015300DNA-binding pseudobarrel domain
CDDcd100173.90E-16899No hitNo description
PROSITE profilePS5086313.3528101IPR003340B3 DNA binding domain
SMARTSM010192.5E-1610101IPR003340B3 DNA binding domain
PfamPF023622.5E-131199IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-6150232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-4151234IPR015300DNA-binding pseudobarrel domain
PfamPF134565.9E-13306382No hitNo description
CDDcd062221.83E-8306388No hitNo description
SuperFamilySSF530982.02E-6306382IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MADIGALPRF FIVFLSESCT ESLAIPPSFN QHLRNPLPRT AKLQGCGPKV WKVSMRKRHE  60
YIYFTIGWRE FAEENDLTDG EFLTFVYDGS RTFEVSIYNR YGCKEIRGQG NQHFPIEVDD  120
GSEAPTETDI AETGVAEANS TTVDLPTPNL PNPCFETKVK NRKYELLIPR ILVKDYDLRF  180
GSCINYIDEF GILPGIKRQW KDRICFQGWD TICKRNNLKD EDTISCELLH NQNLRRKFHR  240
ILQQISHAIQ VRAVVVLDNE TVNLHALTQS HWIGQNTKQR TQGDSIRNNN FDLFKQAISV  300
TRTPTVDASW TSANHVAGIG WVLYHPNGQR LLHGKGSIKP TSTPREAEAL ALLYAVKEFG  360
KLNFRSVIFD GDCTAVYQEI NTLVSRKIGD EADKLAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A7e-2211033104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA36G00041
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403705.11e-72B3 domain-containing protein REM20
TrEMBLV4LZ343e-71V4LZ34_EUTSA; Uncharacterized protein
STRINGXP_006403705.15e-72(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.18e-68B3 family protein