PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA36G00042
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 252aa    MW: 29145.1 Da    PI: 6.6106
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA36G00042genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.4e-151197297
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                f v+++++ ++s+   +p +f e+ +  ++ +k+ +l+    ++W+vk+  r+ +g + +t GW+ F+++n+Lk+g+f++F +dg ++f   v+++
  AA36G00042 11 FAVFLSESCTESA---IPSSFNEHLK--HPLPKKAKLQYCGQKVWKVKM--RQIQGDICFTHGWRLFAEENDLKDGEFLTFVYDGFRTF--EVTIY 97
                5566566666665...9****85555..45999****************..*******************************9986666..55554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.0267100IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-188102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-15898No hitNo description
SMARTSM010195.4E-1510100IPR003340B3 DNA binding domain
PfamPF023621.5E-121096IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-1810101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-9156237IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-6156239IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.025159251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVNNGVLPRF FAVFLSESCT ESAIPSSFNE HLKHPLPKKA KLQYCGQKVW KVKMRQIQGD  60
ICFTHGWRLF AEENDLKDGE FLTFVYDGFR TFEVTIYNRY GCKENRSLVI QQDTMDGLVI  120
QQDTMDVDDR SDSCTETDNE ESDDAVANSA IEYLPNPCFQ TQIRNRKFEL LIPANVVSGY  180
HLRFGSCVNF IDETGILKGT KGNWTDQRIC FRGWNRICRR NKLKDDDIVT CELLHNQNLV  240
HSIKITIIHR ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A5e-14910210104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA36G00042
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877911.15e-79B3 domain-containing protein REM20
TrEMBLD7LUG91e-77D7LUG9_ARALL; Uncharacterized protein
STRINGBostr.11793s0064.1.p1e-78(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.15e-67B3 family protein