PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA36G00045
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 128aa    MW: 14942.9 Da    PI: 7.1292
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA36G00045genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-161398497
                E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3  4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                v+   + + +  l +p +f  +h  +  + ++t +++    ++W+v +  rk+ + +++t GW+eF+++n+L +g+f++F +dg+++f   v+++
  AA36G00045 13 VF--LSESCTESLAIPLSFN-QHlRN--PLPRTAKFQGCGPKVWKVDM--RKREEYIYFTVGWQEFAEENDLTDGEFLTFVYDGSRTF--EVSIY 98
                44..3444455699*****8.55243..4899****************..****99**************************997777..67665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-208102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-218103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.0148101IPR003340B3 DNA binding domain
CDDcd100171.06E-15899No hitNo description
SMARTSM010191.4E-1610101IPR003340B3 DNA binding domain
PfamPF023624.7E-141299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MADNGILPRF FLVFLSESCT ESLAIPLSFN QHLRNPLPRT AKFQGCGPKV WKVDMRKREE  60
YIYFTVGWQE FAEENDLTDG EFLTFVYDGS RTFEVSIYNR YGCKETRGQG NQQVNFFCIF  120
QRVSQPKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A8e-2411033104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA36G00045
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293000.11e-43B3 domain-containing protein REM20
RefseqXP_006403705.11e-43B3 domain-containing protein REM20
SwissprotQ8LAV54e-37REM20_ARATH; B3 domain-containing protein REM20
TrEMBLR0HPM73e-42R0HPM7_9BRAS; Uncharacterized protein
TrEMBLV4LZ342e-42V4LZ34_EUTSA; Uncharacterized protein
STRINGCagra.0612s0056.1.p2e-43(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-39B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]