PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA37G00096

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

LBD

Protein Properties

Length: 166aa MW: 18366.1 Da PI: 8.584

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA37G00096	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.5	2.6e-44	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC++dCv+apyfpa++p kfa+vhk+FGasnv k+l++l+e++r+da++s+vyeA ar++dP+yG+vg+i++lq+qle+l+++la +++ AA37G00096 14 PCAACKLLRRKCVRDCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSESHRSDAVNSMVYEATARVQDPIYGCVGTISSLQRQLETLQTQLAFAQA 112 7**********************************************************************************************9998 PP DUF260 100 e 100 e AA37G00096 113 E 113 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.37	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-42	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MREKGEKHGG AGSPCAACKL LRRKCVRDCV FAPYFPAKEP YKFAIVHKIF GASNVNKMLQ 60 ELSESHRSDA VNSMVYEATA RVQDPIYGCV GTISSLQRQL ETLQTQLAFA QAELVNVKMM 120 FRRIDNTKPP PYTAIPATLP ANNKPFSGVD VAFVYEDATG DSLWSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-46	10	115	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-46	10	115	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA37G00096

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin. {ECO:0000269\|PubMed:17485849}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473842	2e-83	AB473842.1 Arabidopsis thaliana ASL9 mRNA for ASYMMETRIC LEAVES2-like 9 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020869105.1	8e-93	LOB domain-containing protein 3
Refseq	XP_020869106.1	8e-93	LOB domain-containing protein 3
Refseq	XP_020869107.1	8e-93	LOB domain-containing protein 3
Refseq	XP_020869108.1	8e-93	LOB domain-containing protein 3
Refseq	XP_020869109.1	8e-93	LOB domain-containing protein 3
Refseq	XP_020869110.1	8e-93	LOB domain-containing protein 3
Refseq	XP_020869111.1	8e-93	LOB domain-containing protein 3
Refseq	XP_020869112.1	8e-93	LOB domain-containing protein 3
Refseq	XP_020869113.1	8e-93	LOB domain-containing protein 3
Refseq	XP_020869114.1	8e-93	LOB domain-containing protein 3
Swissprot	Q9SA51	1e-89	LBD3_ARATH; LOB domain-containing protein 3
TrEMBL	D7KEG5	2e-91	D7KEG5_ARALL; Predicted protein
STRING	Al_scaffold_0001_1711	3e-92	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16530.1	8e-82	ASYMMETRIC LEAVES 2-like 9

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]