PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA37G00186
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 221aa    MW: 25372.9 Da    PI: 7.4487
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA37G00186genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.25.2e-241966249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie +s rqvtfskRr+g++KKA+EL++LC++eva+i+fs+ +k + +
  AA37G00186 19 KIEKESHRQVTFSKRRAGLFKKASELCTLCGVEVAIIVFSPANKPFSF 66
                69***************************************9997766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-341069IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.22E-281092IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.2731070IPR002100Transcription factor, MADS-box
CDDcd002654.51E-351178No hitNo description
PRINTSPR004041.9E-181232IPR002100Transcription factor, MADS-box
PfamPF003194.4E-271966IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-183247IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-184768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MRWKKKGGSM GRQRIPMAKI EKESHRQVTF SKRRAGLFKK ASELCTLCGV EVAIIVFSPA  60
NKPFSFAHPN LDSVLDHYII SPNNPYYYST HDIDSTTEAE GRNTTRSSCE LNVVLTQVLS  120
ELEEEKKKGQ AMEEMRKLGR MKQWWEAPIE EMNLVDLQQM KLALGELRNA VAFAQQSLEN  180
NMAFFNYGDN KQEDDFNLMD NKPLPPSYIS STFPNTCNFP Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-171078169MEF2C
5f28_B1e-171078169MEF2C
5f28_C1e-171078169MEF2C
5f28_D1e-171078169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA37G00186
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405049.13e-75agamous-like MADS-box protein AGL61
SwissprotQ4PSU41e-71AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLV4LVK67e-74V4LVK6_EUTSA; Uncharacterized protein
STRINGXP_006405049.11e-74(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-74AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]