PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA38G00006
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 182aa    MW: 20772.5 Da    PI: 9.6785
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA38G00006genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.3e-144185147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+++++E +l+++++++lG++ W +Ia +++ gRt++++k +w ++
       AA38G00006 41 KGNFSEDENDLIIKLHALLGNR-WCLIAGRLP-GRTENEVKKHWDSF 85
                     79********************.*********.***********776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.43E-122494IPR009057Homeodomain-like
PROSITE profilePS5129417.8063690IPR017930Myb domain
SMARTSM007178.5E-134088IPR001005SANT/Myb domain
PfamPF002492.5E-124183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-174286IPR009057Homeodomain-like
CDDcd001671.35E-104386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MNKSHNLALS PSSGSRNFKT GIGKRCKVIR IKQLSPDFRL KGNFSEDEND LIIKLHALLG  60
NRWCLIAGRL PGRTENEVKK HWDSFLKMKL INMGIDPNNH RLHHHHNILH TQKHQIYNNH  120
HHHEPSSSSV SESCEDQDLS SSRGHDLPDL NIGLNTMTKK VASLHDQTDS SSTLQETLLL  180
FR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-13159034108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA38G00006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177259.11e-44MYB-like 2
TrEMBLA0A1J3DM559e-44A0A1J3DM55_NOCCA; Uncharacterized protein (Fragment)
TrEMBLA0A1J3J8P16e-44A0A1J3J8P1_NOCCA; Uncharacterized protein
STRINGAT1G71030.14e-44(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71030.11e-36MYB-like 2