PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA38G00115
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ZF-HD
Protein Properties Length: 218aa    MW: 23765.4 Da    PI: 8.3313
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA38G00115genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer941.3e-291668259
  ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                 ++v YkeClkNhAa+lGgha+DGCgEfm+++      ++l+CaACgCHRnFHRr++++
   AA38G00115 16 MGVSYKECLKNHAANLGGHALDGCGEFMSNP-----NSSLTCAACGCHRNFHRRDNNN 68
                 5799*************************93.....468***************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-121857IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.1E-241866IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.7E-262065IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.2412065IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.22E-18118191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.9E-26122191IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-28131188IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDSCSELKQK DSDQEMGVSY KECLKNHAAN LGGHALDGCG EFMSNPNSSL TCAACGCHRN  60
FHRRDNNNNL SFVQTPNSSP SATELSPPLQ PIASPVPCSY YTSAPHVLLS LSSSGFPSGP  120
SDNTNRTRGV RKRTRTKFTG DQKVKMRGFA EKAGWKINGC DEKLVKEFCD EIGIERSVLK  180
VWMHNNKYSL RDSTTNLSLT TNNNGVHTAL SPDASSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A8e-191301891675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA38G00115
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302745.19e-88zinc-finger homeodomain protein 11
RefseqXP_010512006.16e-88PREDICTED: zinc-finger homeodomain protein 11-like isoform X1
RefseqXP_019101642.16e-88PREDICTED: zinc-finger homeodomain protein 11-like isoform X2
SwissprotQ9SEZ12e-88ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLR0IFT82e-86R0IFT8_9BRAS; Uncharacterized protein
STRINGXP_006302745.13e-87(Capsella rubella)
STRINGXP_010512007.12e-87(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-63zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]